• Ku J*, Kim S*, Park J, Kim T-S, Kharbash R, Shin E-C, Char K, Kim Y#, Li S#.  Reactive Polymer Targeting dsRNA as Universal Virus Detection Platform with Enhanced Sensitivity. Biomacromolecules. (In press)
  • Ali AA*, Kharbash R*, Kim Y.  Chemo- and Biosensing Applications of Spiropyran and Its Derivatives – A Review. Analytica Chimica Acta. (In press)
  • Aldonza MD, Ku J, Hong JY, Kim D, Yu S, Lee MS, Prayogo M, Tan S, Kim D, Han J, Lee S, Im S, Ryu H, Kim Y. Prior acquired resistance to paclitaxel relays diverse EGFR-targeted therapy persistence mechanisms. Science Advances. 6, eaav7416.


  • Kim S, Ku Y, Ku J, Kim Y. (2019). Evidence of aberrant immune response by endogenous double-stranded RNAs: Attack from within. BioEssays. 41, e1900023.
  • Kunkeaw N, Lee YS, Im WR, Jang JJ, Song M, Yang B, Park J, Kim S, Ku Y, Kim Y, Kang S, Jo H, Jeong J, Lee H, Lee J, Kim H, Johnson BH, Kim I, Lee YS. (2019). Mechanism mediated by a noncoding RNA, nc886, in the cytotoxicity of a DNA-reactive compound. Proc Natl Acad Sci U S A. 116, 8289-8294.
  • Ali AA, Kang M, Kharbash R#, and Kim Y#. (2019). Spiropyran as a potential molecular diagnostic tool for double-stranded RNA detection. BMC Biomedical Engineering. 1, 6.
  • Kim S, Kang M, Kim Y. (2019). Studying RNA interactors of protein kinase RNA-activated during the mammalian cell cycle. J Vis Exp. 145, e59215
  • Kim S, Kim Y. (2019). Biophysical and biochemical approaches in the analysis of Argonaute-microRNA complexes. In C. Joo and D Rueda (Ed.). Biophysics of RNA-Protein Interactions: A Mechanistic View (pp. 167-188). New York, NY: Springer Nature


  • Kim S, Ku J, Park J, Kharbash R, and Li S. (2018). Preparation of Poly(pentafluorophenyl acrylate) Functionalized SiO2 Beads for Protein Purification. J Vis Exp. 141, e58843.
  • Kim Y*#, Park J*, Kim S*, Kim M, Kang MG, Kwak C, Kang M, Kim B, Rhee HW, and Kim VN#. (2018). PKR senses nuclear and mitochondrial signals by interacting with endogenous double-stranded RNAs. Mol Cell71, 1051-1063.
  • Son H, Ku J, Kim Y, Li S#, and Char K#. (2018). Amine-Reactive Poly(Pentafluorophenyl Acrylate) Brush Platforms for Cleaner Protein Purification. Biomacromolecules 19, 951-961.


  • Jang Y*, Kim M*, and Kim Y. (2017). Two faces of competition: target-mediated reverse signaling in microRNA and mitogen-activated protein kinase regulatory networks. IET Syst Biol. 11, 105-113.


  • Park J.-E*, Yi H*, Kim Y*, Chang H, and Kim VN. (2016). Regulation of poly(A) tail and translation during the somatic cell cycle. Mol Cell.  62462-471.


  • Kim Y*, Yeo J*, Lee JH*, Cho J, Suh D, Kim J, and Kim VN. (2014). Deletion of human tarbp2 reveals cellular microRNA targets and cell cycle function of TRBP. Cell Rep. 9, 1061-1074.
  •  Kim Y, Lee JH, Park JE, Cho J, Yi H, and Kim VN. (2014). PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator. Genes Dev28, 1310-1322.
  • Kim Y, Iagovitina A, Ishihara K, Fitzgerald KM, Deplancke B, Papatsenko D, and Shvartsman SY. (2013). Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. Chaos23, 025105.
  • Cho J*, Chang H*, Kwon SC, Kim B, Kim Y, Choe J, Ha M, Kim YK, and Kim VN. (2012). LIN28A Is a Suppressor of ER-Associated Translation in Embryonic Stem Cells. Cell151, 765-777.
  • Grimm O*, Sanchez Zini V*, Kim Y, Casanova J, Shvartsman SY, and Wieschaus E. (2012). Torso RTK controls Capicua degradation by changing its subcellular localization. Development139, 3962-3968.
  • Helman A, Lim B, Andreu MJ, Kim Y, Shestkin T, Lu H, Jiménez H, Shvartsman SY, and Paroush Z. (2012). RTK signaling modulates the Dorsal gradient. Development139, 3032-3039.
  • Kim Y and Kim VN. (2012). MicroRNA Factory: RISC Assembly from Precursor MicroRNAs. Mol Cell46, 384-386.
  • Kanodia JS, Liang HL, Kim Y, Lim B, Zhan M, Lu H, Rushlow CA, and Shvartsman SY. (2012). Pattern Formation by Graded and Uniform Signals in the Early Drosophila Embryo. Biophys J.102, 427-433.
  • Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, and Shvartsman SY. (2011). A computational statistics approach for estimating the spatial range of morphogen gradients. Development138, 4867-4874.
  • Kim Y, Andreu MJ, Lim B, Chung K, Terayama M, Jiménez G, Berg CA, Lu H, and Shvartsman SY. (2011). Gene Regulation by MAPK Substrate Competition. Dev Cell20, 880-887.
  • Kim Y, Paroush Z, Nairz K, Hafen E, Jiménez G, and Shvartsman SY. (2011). Substrate-dependent control of MAPK phosphorylation in vivoMol Syst Biol. 7, 467.
  • Chung K*, Kim Y*, Kanodia JS, Gong E, Shvartsman SY, and Lu H. (2011). A microfluidic array for large-scale ordering and orientation of embryos. Nat Methods. 8, 171-176.
  • Tipping M, Kim Y, Kyriakakis P, Tong M, Shvartsman SY, and Veraksa A. (2010). b-arrestin Kurtz inhibits MAPK and Toll signalling in Drosophila development. EMBO J. 29, 3222-3235.
  • Kavousanakis ME, Kanodia JS, Kim Y, Kevrekidis IG, and Shvartsman SY. (2010). A compartmental model for the bicoid gradient. Dev Biol. 345, 12-17.
  • Kim Y, Coppey M, Grossman R, Ajuria L, Jiménez G, Paroush Z, and Shvartsman SY. (2010). MAPK Substrate Competition Integrates Patterning Signals in the Drosophila Embryo. Curr Biol. 20, 446-451.
  • Kanodia JS, Rikhy R, Kim Y, Lund VK, DeLotto R, Lippincott-Schwartz J, and Shvartsman SY. (2009). Dynamics of the Dorsal morphogen gradient. Proc Natl Acad Sci USA. 106, 21707-21712.
  • Coppey M, Berezhkovskii AM, Kim Y, Boettiger AN, and Shvartsman SY. (2007). Modeling the bicoid gradient: Diffusion and reversible nuclear trapping of a stable protein. Dev Biol. 312, 623-630.